diff --git a/Tools/px4moduledoc/markdownout.py b/Tools/px4moduledoc/markdownout.py
index 2b8dbbba3e..9896c091b4 100644
--- a/Tools/px4moduledoc/markdownout.py
+++ b/Tools/px4moduledoc/markdownout.py
@@ -28,7 +28,7 @@ available commands, and in most cases `command help` will print the usage.
 Since this is generated from source, errors must be reported/fixed
 in the [PX4-Autopilot](https://github.com/PX4/PX4-Autopilot) repository.
 The documentation pages can be generated by running the following command from
-the root of the Firmware directory:
+the root of the PX4-Autopilot directory:
 ```
 make module_documentation
 ```
@@ -66,7 +66,7 @@ The generated files will be written to the `modules` directory.
         result = ''
         for module in module_list:
             result += "## %s\n" % module.name()
-            result += "Source: [%s](https://github.com/PX4/Firmware/tree/master/src/%s)\n\n" % (module.scope(), module.scope())
+            result += "Source: [%s](https://github.com/PX4/PX4-Autopilot/tree/master/src/%s)\n\n" % (module.scope(), module.scope())
             doc = module.documentation()
             if len(doc) > 0:
                 result += "%s\n" % doc